Coll F, Mallard K, Preston MD, et al. SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. Bioinformatics. 2012;28(22):2991-2993. doi:10.1093/bioinformatics/bts544
Coll F, Preston M, Guerra-Assunção JA, et al. PolyTB: A genomic variation map for Mycobacterium tuberculosis. Tuberculosis. 2014;94(3):346-354. doi:10.1016/j.tube.2014.02.005
Coll F, McNerney R, Guerra-Assunção JA, et al. A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nature Communications. 2014;5(1):4812. doi:10.1038/ncomms5812
Coll F, McNerney R, Preston MD, et al. Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome Medicine. 2015;7(1):51. doi:10.1186/s13073-015-0164-0
Coll F, Harrison EM, Toleman MS, et al. Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community. Science Translational Medicine. 2017;9(413):eaak9745. doi:10.1126/scitranslmed.aak9745
Coll F, Phelan J, Hill-Cawthorne GA, et al. Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature Genetics. 2018;50(2):307-316. doi:10.1038/s41588-017-0029-0
Leclerc QJ, Naylor NR, Aiken AM, Coll F#, Knight GM#. Feasibility of informing syndrome-level empiric antibiotic recommendations using publicly available antibiotic resistance datasets. Wellcome Open Research. 2020;4:140. doi:10.12688/wellcomeopenres.15477.2
Coll F, Raven KE, Knight GM, et al. Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis. The Lancet Microbe. 2020;1(8):e328-e335. doi:10.1016/S2666-5247(20)30149-X
Gouliouris T, Coll F, Ludden C, et al. Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance. Nature Microbiology. 2020;6(1):103-111. doi:10.1038/s41564-020-00806-7
Coll F. Key variables affecting genetic distance calculations in genomic epidemiology. The Lancet Microbe. 2021;5247(21):6-7. doi:10.1016/S2666-5247(21)00183-X
Coll F, Gouliouris T, Bruchmann S, et al. PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies. Communications Biology. 2022;5(1):266. doi:10.1038/s42003-022-03194-2
Coll F, Blane B, Bellis K, et al. The mutational landscape of Staphylococcus aureus during colonisation. bioRxiv. 2023
Coll F, Gouliouris T, Blane B, et al. Antibiotic resistance determination using Enterococcus faecium whole-genome sequences: a diagnostic accuracy study using genotypic and phenotypic data. January 11, 2024. The Lancet Microbe. DOI: 10.1016/S2666-5247(23)00297-5
Selected oral presentation at 34th Annual Congress of the European Society of Mycobacteriology, Florence, Italy
Poster presentation at Gordon Research Conference on Staphylococcal Diseases, Lucca (Barga), Italy
Poster presentation at 27th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Vienna, Austria
Poster presentation at Microbiology Society Annual Conference, Birmingham, UK
Invited speaker at 29th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, The Netherlands
Selected oral presentation at 29th European Congress of Clinical Microbiology and Infectious Diseases, Amsterdam, The Netherlands
Selected oral presentation at Cambridge, UK., Antimicrobial Resistance - Genomes, Big Data and Emerging Technologies.
Invited speaker at British Thoracic Society Winter Meeting, Online congress
Selected oral presentation at World Microbe Forum, Online congress
Selected oral presentation at 31st European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), Online congress
Selected oral presentation at 13th International Meeting on Microbial Epidemiological Markers, Bath, UK
Invited speaker at 6th International Conference on Enterococci, O Porto, Portugal